Changelog • ubms

Package links now go to biodiverse Github org
Use reformulas instead of lme4
Return eta from ranef when submodel has spatial component
Support terra format rasters in predict
Minor bugfixes

Fix deprecated Stan code

Fix issue with version number not being a string
Adding missing roxygen tag

Adjust Makevars to fix problems with clang 16

Fix bug in Stan code revealed by new StanHeaders
Drop C++ specification per CRAN instructions
Remove deprecated ggplot2 functions
Small updates to overview vignette

Fix broken URLs in vignettes
New kfold function
Add ability to not save log likelihoods in posterior
Add new Laplace prior (thanks Justin Cally)
Better handling of factors with levels that don’t appear in data
Fix CRAN clang warnings
Misc. bugfixes

Support for restricted spatial regression (RSR)
Add vignette for RSR
Update default priors and allow setting custom priors
Support for offsets
New utility functions and bugfixes

Make default priors less informative
Fix issues in sim_z C++ code that triggered clang-UBSAN errors
Fix various minor issues with checks/tests on R-oldrel

Added vignette comparing ubms and JAGS output
Added configuration for pkgdown site
Small adjustments to wording in DESCRIPTION and docs for CRAN submission

Add time-to-detection occupancy model (stan_occuTTD)
Wrote examples for all fitting functions
Many new tests added
Wrote a vignette demonstrating random effects

Added distance-sampling model (stan_distsamp)
Added multinomial-Poisson mixture model (stan_multinomPois)
Wrote overview vignette

Added dynamic occupancy model (stan_colext)
Consolidated single-season models into one Stan file to speed up compilation
Using rasters as predict input is now supported