Reference

Modeling functions
stan_colext()	Fit the MacKenzie et al. (2003) Dynamic Occupancy Model
stan_distsamp()	Fit the Royle et al. (2004) Distance Sampling Model
stan_multinomPois()	Fit the Multinomial-Poisson Mixture Model
stan_occu()	Fit the MacKenzie et al. (2002) Occupancy Model
stan_occuRN()	Fit the Occupancy Model of Royle and Nichols (2003)
stan_occuTTD()	Fit Time-to-detection Occupancy Models
stan_pcount()	Fit the N-mixture model of Royle (2004)
normal() uniform() student_t() logistic() cauchy() gamma() laplace()	Prior distributions
RSR()	Get Information for a Restricted Spatial Regression Model
Model diagnostics
fitted(<ubmsFit>)	Extract Fitted Values
gof()	Check model goodness-of-fit
plot(<ubmsFit>,<ANY>)	Plot Residuals For All Submodels in a ubmsFit Model
plot_residuals(<ubmsFit>)	Plot Model Residuals
plot_posteriors(<ubmsFit>)	Plot Posterior Distributions
residuals(<ubmsFit>)	Extract Model Residuals
traceplot(<ubmsFit>)	Markov Chain Traceplots
Model selection
extract_log_lik()	Extract Pointwise Log-likelihood From Model
fitList(<ubmsFit>)	Create a List of ubmsFit Models
kfold(<ubmsFit>)	K-fold Cross-validation of a ubmsFit Model
loo(<ubmsFit>)	Leave-one-out Cross Validation
modSel(<ubmsFitList>)	Model Selection For a List of ubmsFit Models
waic(<ubmsFit>)	Widely Applicable Information Criterion (WAIC)
Inference
coef(<ubmsFit>)	Extract Coefficient Values From a ubmsFit Model
extract(<ubmsFit>)	Extract Samples From a ubmsFit Model
plot_effects(<ubmsFit>) plot_marginal(<ubmsFit>)	Plot Marginal Effects of Covariates
plot_spatial()	Plot A Map of the State Parameter Based on a Spatial ubms Model
posterior_linpred(<ubmsFit>)	Posterior Distribution of the Linear Predictor
posterior_predict(<ubmsFit>)	Draw from the posterior predictive distribution
predict(<ubmsFit>)	Predict parameter values from a fitted model
projected()	Projected Occupancy Trajectories
ranef(<ubmsFit>)	Extract Random Effects
summary(<ubmsFit>)	Extract Summary Statistics from a ubmsFit Model
turnover()	Turnover Probability
Utility
get_elapsed_time(<ubmsFit>)	Get Model Runtime
get_stancode(<ubmsFit>)	Get Stan Code From Model