Projected Occupancy Trajectories

Generate posterior draws of occupancy probability for all sites and primary periods, i.e. the projected trajectory (Weir et al. 2009).

projected(object, ...)

# S4 method for class 'ubmsFitColext'
projected(object, draws = NULL, re.form = NULL, ...)

Arguments

object

A fitted dynamic occupancy model of class inheriting ubmsFit

...

Currently ignored

draws

Number of draws from the posterior to use in the check

re.form

If NULL, any estimated group-level parameters ("random effects") are included. If NA, they are ignored

Value

A matrix of occupancy values from the posterior predictive distribution. The dimensions are draws by number of sites x primary periods in site-major order.

References

Weir LA, Fiske IJ, Royle J. 2009. Trends in Anuran Occupancy from Northeastern States of the North American Amphibian Monitoring Program. Herpetological Conservation and Biology. 4: 389-402.

See also

stan_colext